Our data sets.
Our data sets.
We strongly believe that data sets from published and unpublished manuscripts should be available for use by the biological community. Below, we have listed the data sets available from our published an unpublished work. If you have any questions regarding these data, please drop us a line @fairclothlab on Twitter, and we'll do our best to answer your question or provide any files that may be missing or corrupted.
Faircloth BC. (2013) 2,001 target enrichment probes targeting 500 loci in ray-finned fishes (Actinopts-UCE-0.5Kv1). doi: 10.6084/m9.figshare.832549
Faircloth BC. (2012) 5,472 target enrichment probes targeting 5,060 UCE loci in amniotes/tetrapods (Tetrapods-UCE-5Kv1). doi: 10.6084/m9.figshare.832548
Faircloth BC. (2012) 2,560 target enrichment probes targeting 2,386 UCE loci in amniotes/tetrapods (Tetrapods-UCE-2.5Kv1). doi: 10.6084/m9.figshare.832547
Data from: S Keping, Meiklejohn KA, BC Faircloth, Glenn TC, Braun EB, Kimball RT (2014). The evolution of peafowl and other taxa with ocelli (eyespots): A phylogenomic approach. Proc R Soc Lond B Biol Sci 281: 20140823. doi:10.1098/rspb.2014.0823
Data from: TC Glenn, SL Lance, AM McKee, BL Webster, AM Emery, A Zerlotini, G Oliveira, D Rollinson, BC Faircloth (2014). Significant variance in genetic diversity among populations of Schistosoma haematobium detected using microsatellite DNA loci from a genome-wide database. Parasit Vectors 6:300. doi: 10.1186/1756-3305-6-300
Data from: BT Smith, MG Harvey, BC Faircloth, TC Glenn, RT Brumﬁeld (2014) Target capture and massively parallel sequencing of ultraconserved elements (UCEs) for comparative studies at shallow evolutionary time scales. Syst Biol 63:83-95. doi: 10.1093/sysbio/syt061
Data from: BC Faircloth**, L Sorenson, F Santini, ME Alfaro** (2013) A phylogenomic perspective on the radiation of ray-finned fishes based upon targeted sequencing of ultraconserved elements (UCEs). PLoS ONE 8(6): e65923. doi:10.1371/journal.pone.0065923
Data from: JE McCormack, MG Harvey, BC Faircloth, NG Crawford, TC Glenn, RT Brumfield (2013) A phylogeny of birds based on over 1,500 loci collected by target enrichment and high-throughput sequencing. PLoS ONE 8(1): e54848. doi:10.1371/journal.pone.0054848
Data from: BC Faircloth, TC Glenn (2012) Not all sequence tags are created equal: Designing and validating sequence identification tags robust to indels. PLoS ONE 7(8): e42543. doi:10.1371/journal.pone.0042543
Data from: NG Crawford, BC Faircloth, JE McCormack, RT Brumﬁeld, K Winker, TC Glenn (2012) More than 1000 ultraconserved elements provide evidence that turtles are the sister group of archosaurs. Biol Lett 8:783-786. pmid: 22593086 doi: 10.1098/rsbl.2012.0331
Data from: JA St. John, EL Braun, SR Isberg, LG Miles, AY Chong, J Gongora, P Dalzell, C Moran, T Iguchi, B Bed’Hom, SC Burgess, AM Cooksey, TA Castoe, A Abzhanov, LD Densmore, M Venegas-Anya, MJ Greenwold, RH Sawyer, FG Hoffmann, NG Crawford, JC Drew, SV Edwards, MK Fujita, JM Howard, BC Faircloth, DE Janes, S Yar Khan, Si Kohno, APJ de Koning, SL Lance, FM McCarthy, JE McCormack, ME Merchant, DG Peterson, DD Pollock, N Pourmand, BJ Raney, KA Roessler, JR Sanford, CJ Schmidt, EW Triplett, TD Tuberville, ED Jarvis, LJ Guillette Jr, TC Glenn, RE Green, DA Ray (2012) Sequencing three crocodilian genomes to illuminate the evolution of archosaurs and amniotes. Genome Biol 13:415-427. pmid: 22293439 doi: 10.1186/gb-2012-13-1-415
Data from: BC Faircloth, JE McCormack, NG Crawford, MG Harvey, RT Brumfield, TC Glenn (2012) Ultraconserved elements anchor thousands of genetic markers for target enrichment spanning multiple evolutionary timescales. Syst Biol 61:717-726. doi: 10.1093/sysbio/SYS004
Data from: JE McCormack**, BC Faircloth**, NG Crawford, PA Gowaty, RT Brumfield, TC Glenn (2012) Ultraconserved elements are novel phylogenomic markers that resolve placental mammal phylogeny when combined with species tree analysis. Genome Res 26:746-754. doi: 10.1101/gr.125864.111